Yungsiyebu 发表于 2017-8-19 21:18

潮汕汉族的疑似M117+ Y-STR分型

本帖最后由 Yungsiyebu 于 2017-8-20 00:25 编辑

数据来自:Haplotype data for 27 Y-chromosomal STR loci in the Chaoshan Han population, South China

yfiler 17 y-str,Eulidean距离<=1.4142136,即2步突变距离。筛选1000G和个人中高通量测试样本的匹配样本。

疑似Y7080+ 4例。
H114HanGuangdong chaoshan1F5 CTS1642 Y7080H116HanGuangdong chaoshan1F5 CTS1642 Y7080H117HanGuangdong chaoshan1F5 CTS1642 Y7080H122HanGuangdong chaoshan1F5 CTS1642 Y708019385a385b389AB389CD3903913921413171216251014141317121625101414131712162510141413161216261014393437438439448456458635H4121411132015182013121511132015182013121511132015202012121511132015182012
疑似CTS5063+,6例;
No.Populationlocation,freSNPHalpogroupSNP exceptedH63HanGuangdong chaoshan1F5 CTS5063 *H64HanGuangdong chaoshan1F5 CTS5063 *H65HanGuangdong chaoshan1F5 CTS5063 *H70HanGuangdong chaoshan1F5 CTS5063 *H71HanGuangdong chaoshan1F5 CTS5063 *H100HanGuangdong chaoshan1F5 CTS5063 *19385a385b389AB389CD390391392393141518121623101412141518121623101412141518121623101412141519121623101412141519121623101412141518121624101412437438439448456458635H4151112201519201215111220151920121511122016192012151112201519201215111220151920121511122015192011
疑似CTS5063+ CTS1154+,4例;
No.Populationlocation,freSNPHalpogroupSNP exceptedH62HanGuangdong chaoshan1F5 CTS5063 CTS1154H68HanGuangdong chaoshan1F5 CTS5063 CTS1154H69HanGuangdong chaoshan1F5 CTS5063 CTS1154H80HanGuangdong chaoshan1F5 CTS5063 CTS115419385a385b389AB389CD390391392393141518121623101412141519121623101412141519121623101412141519121623101412437438439448456458635H41511122015182112151112201518201215111220151820121511132016182012
疑似F438+ F1754+,1例;No.Populationlocation,freSNPHalpogroupSNP exceptedH42HanGuangdong chaoshan1F5 F438 F175419385a385b389AB389CD390391392393141319121523111412437438439448456458635H41511122015182011

疑似F666+,1例;
No.Populationlocation,freSNPHalpogroupSNP exceptedH107HanGuangdong chaoshan1F5 Y8389 F666 F153119385a385b389AB389CD39039139239314171712162410141243743843944845645863516111220151821

疑似F5* NA18624,3例;
No.Populationlocation,freSNPHalpogroupSNP exceptedH101HanGuangdong chaoshan1F5* NA18624H105HanGuangdong chaoshan1F5* NA18624H109HanGuangdong chaoshan1F5* NA1862419385a385b389AB389CD390391392393141217121624101412141419121624101412141317121624101512437438439448456458635H4151113201519201215111320151920121511132015192012

Yungsiyebu 发表于 2017-8-19 21:30

疑似F317+,32例;
H59HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H98HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H99HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H209HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H232HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H235HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H277HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H280HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H282HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H283HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H284HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H285HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H286HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H287HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H288HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H289HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H290HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H291HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H292HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H293HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H294HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H295HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H296HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H297HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H298HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H300HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H302HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H308HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H313HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H329HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H330HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+H584HanGuangdong chaoshan1F5+ CTS7634/F3599+ 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

Yungsiyebu 发表于 2017-8-19 21:32

本帖最后由 Yungsiyebu 于 2017-8-19 21:34 编辑

还有3例样本,有混淆。

No.Populationlocation,freSNPHalpogroupSNP exceptedH61HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+ or F5 CTS5063 *H118HanGuangdong chaoshan1F5* NA18624 or F5 CTS1642 Y7080H233HanGuangdong chaoshan1F5+ CTS7634/F3599+ F317/F2188+ or F5 CTS5063 *19385a385b389AB389CD390391392393141518121623101412141318121625101412151518121623101412437438439448456458635H4151112201518201215111320151820121511122015192012

Tocharian_2 发表于 2017-8-20 08:29

本帖最后由 Tocharian_2 于 2017-8-20 09:18 编辑

这一例与本人17STR差2步。

虽说STR差1,2步,甚至全同都可能是偶然造成,不一定说明晚近共祖。可是,这一例在385这个位点上,和我一样是17/17的罕见值。在一个位点上同为罕见值,其它位点基本上又能对上,偶然雷同的可能性就大大降低了。可能代表了一个晚近的簇。

http://www.ranhaer.com/viewthread.php?tid=7452&page=2#pid221374


类似的样本,我在Wu Weiwei浙江数据中见过3例,一个山东千人左右的数据中见过1例,广州样本中见过1例。比例最高的是一个不到千人的甘肃数据有3例。

去年,我在Yhrd上用包含385在内的6STR检索,发现了这例潮汕匹配。现在看到其完整STR数据,确实基本与我匹配。另外,在附近的梅州客家人500多人数据中,找到20例匹配!现在相关文章还没出来,看不到完整STR信息。如果这些样本的确与我匹配的话,这个疑是簇或许与客家人有关。

http://www.ranhaer.com/viewthread.php?tid=7452&page=5#pid493641

希望某一天这个簇能通过高通测序确认。如果F2781占全国人口的比例只有千分之一的话,这个疑是簇顶多只能到万分之几。恐怕要等到高通全面普及的时候了。

Manaus 发表于 2017-8-20 08:57

4# Tocharian_2

你表达得不严谨,不是与客家人有关,是与华南内陆人群有关

竹海聽聲 发表于 2017-9-4 10:18

H122和我只差兩步,而且是同一位點上差兩步,這四位y7080姓什麼呀
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